Publications
Browse by Year: 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 |2005 | older
Journals | Conferences | Books/Book Chapters | Publications (non-peer-reviewed) | Theses
Journals
| Title: | msa: an R package for multiple sequence alignment | |
| Author(s): | Ulrich Bodenhofer, Enrico Bonatesta, Christoph Kainrath, Sepp Hochreiter | |
| Published: | Bioinformatics, 31(24):3997-3999, 2015 doi:10.1093/bioinformatics/btv494 |
|
| Download: | PDF |
|
| Title: | Prediction of human population responses to toxic compounds by a collaborative competition | |
| Author(s): | Federica Eduati, Lara M Mangravite, Tao Wang, Hao Tang, ... , Sepp Hochreiter, Günter Klambauer, Andreas Mayr, ... , Ivan Rusyn, Fred A Wright, Gustavo Stolovitzky, Yang Xie, Julio Saez-Rodriguez | |
| Published: | Nature Biotechnology, 33(9):933-940, 2015 doi:10.1038/nbt.3299 |
|
| Title: | Rchemcpp: a web service for structural analoging in ChEMBL, Drugbank and the Connectivity Map | |
| Author(s): | Günter Klambauer, Martin Wischenbart, Michael Mahr, Thomas Unterthiner, Andreas Mayr, Sepp Hochreiter | |
| Published: | Bioinformatics, 31(20):3392-3394, 2015 doi:10.1093/bioinformatics/btv373 | |
| Download: | PDF |
|
| Title: | KeBABS: an R package for kernel-based analysis of biological sequences | |
| Author(s): | Johannes Palme, Sepp Hochreiter, Ulrich Bodenhofer | |
| Published: | Bioinformatics, 31(15):2574-2576, 2015 doi:10.1093/bioinformatics/btv176 | |
| Download: | ||
| Abstract: | Abstract |
|
| Title: | Using transcriptomics to guide lead optimization in drug discovery projects | |
| Author(s): | Bie Verbist, Günter Klambauer, Liesbet Vervoort, Willem Talloen, QSTAR Consortium, Ziv Shkedy, Olivier Thas, Andreas Bender, Hinrich W.H. Göhlmann, Sepp Hochreiter | |
| Published: | Drug Discovery Today, 20(5):505-513, 2015 doi:10.1016/j.drudis.2014.12.014 |
|
| Title: | Connecting gene expression data from connectivity map and in silico target predictions for small molecule mechanism-of-action analysis | |
| Author(s): | Aakash Chavan Ravindranath, Nolen Perualila-Tan, Adetayo Kasim, Georgios Drakakis, Sonia Liggi, Suzanne C. Brewerton, Daniel Mason, Michael J. Bodkin, David A. Evans, Aditya Bhagwat, Willem Talloen, Hinrich W. H. Göhlmann, QSTAR Consortium, Ziv Shkedy, Andreas Bender | |
| Published: | Mol. BioSyst., 11:86-96, 2015 doi:10.1039/C4MB00328D | |
| Download: | Abstract |
|
| Title: | Graded dominance and related graded properties of fuzzy connectives | |
| Author(s): | Libor Behounek, Ulrich Bodenhofer, Petr Cintula, Susanne Saminger-Platz, Peter Sarkoci | |
| Published: | Fuzzy Sets and Systems, 262:78-101, 2015 doi:10.1016/j.fss.2014.04.025 |
Conferences
| Title: | ELU-Networks - Fast and Accurate CNN Learning on ImageNet | |
| Author(s): | Martin Heusel, Djork-Arné Clevert, Günter Klambauer, Andreas Mayr, Karin Schwarzbauer, Thomas Unterthiner, Sepp Hochreiter | |
| Published: | Poster at International Conference on Computer Vision (ICCV 2015), Santiago, Chile, December 13-16, 2015 | |
| Downdload: | PDF |
|
| Title: | Rectified Factor Networks | |
| Author(s): | Djork-Arné Clevert, Andreas Mayr, Thomas Unterthiner, Sepp Hochreiter | |
| Published: | Conference Neural Information Processing Systems Foundation (NIPS 2015), Montreal, Canada, December 7-12, 2015 | |
| Downdload: | PDF, Supplement (PDF) |
|
| Title: | panelcn. MOPS reaches clinical standards as a CNV detection tool for targeted panel sequencing data | |
| Author(s): | Verena Haunschmid, Gundula Povysil, Julia Vogt, Katharina Wimmer, Günter Klambauer, Sepp Hochreiter | |
| Published: | Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2015), Baltimore, USA, October 6-10, 2015 | |
| Abstract: | PDF |
|
| Title: | KeBABS: an R/Bioconductor package for kernel-based analysis of biological sequences | |
| Author(s): | Johannes Palme, Sepp Hochreiter, Ulrich Bodenhofer | |
| Published: | Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2015), Baltimore, USA, October 6-10, 2015 | |
| Abstract: | PDF |
|
| Title: | PODKAT: a software package implementing the position-dependent kernel association test | |
| Author(s): | Ulrich Bodenhofer, Sepp Hochreiter | |
| Published: | Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2015), Baltimore, USA, October 6-10, 2015 | |
| Abstract: | PDF |
|
| Title: | Early Interbreeding between Ancestors of Humans, Neandertals, and Denisovans within Africa | |
| Author(s): | Gundula Povysil, Sepp Hochreiter | |
| Published: | Poster at Annual Meeting of the Society for Molecular Biology and Evolution (SMBE 2015), Vienna, Austria, July 12-16, 2015 | |
| Abstract: | PDF |
Books/Book Chapters
Publications (non-peer-reviewed)
| Title: | Toxicity Prediction using Deep Learning | |
| Author(s): | Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Sepp Hochreiter | |
| Published: | arXiv.org, Mar 2015 | |
| Download: | arXiv:1503.01445 [stat.ML] |
|
| Title: | Rectified Factor Networks | |
| Author(s): | Djork-Arné Clevert, Thomas Unterthiner, Andreas Mayr, Hubert Ramsauer, Sepp Hochreiter | |
| Published: | arXiv.org, Feb 2015 | |
| Download: | arXiv:1502.06464 [cs.LG] |
Theses
| Title: | Support Vector Regression vs. Neural Network Regression in the Field of Predicting Drug-Target Binding Activities | |
| Published: | Master Thesis, 2015 | |
| Author(s): | Alexander Pfaffinger |
|
| Title: | Similarity-based clustering of big data: A parallel ensemble variant of leveraged affinity propagation | |
| Published: | Master Thesis, 2015 | |
| Author(s): | Chrats Melkonian |
|
| Title: | Development, application and analysis of a pipeline for genotype-to-phenotype whole-genome based predictions | |
| Published: | Master Thesis, 2015 | |
| Author(s): | Roman Josef Rainer |
|
| Title: | A copy number analysis and genome-wide association study of schizophrenia data | |
| Published: | Master Thesis, 2015 | |
| Author(s): | Nadine Stein |
|
| Title: | KeBABS - An R Package for Kernel-Based Analysis of Biological Sequences | |
| Published: | Master Thesis, 2015 | |
| Author(s): | Johannes Palme |
|
| Title: | Inferring Regulatory Interactions from Microarray Data Using the FABIA Biclustering Method: A Case Study for E.coli K-12 | |
| Published: | Master Thesis, 2015 | |
| Author(s): | Wilhelm Lichtberger |
|
| Title: | Detecting CNVs in the 1000 Genomes Project Data Using cn.MOPS and Relating the Results to Transcriptome Sequencing Data | |
| Published: | Master Thesis, 2015 | |
| Author(s): | Anna Maria Langmüller |